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Trainee Publications

Bolded authors are Chicago KUH FORWARD Trainees.




Du J, Khemmani M, Halverson T, Ene A, Limeira R, Tinawi L, Hochstedler-Kramer BR, Noronha MF, Putonti C, Wolfe AJ. Cataloging the phylogenetic diversity of human bladder bacterial isolates. Genome Biol. 2024 Mar 21;25(1):75. doi: 10.1186/s13059-024-03216-8. PMID: 38515176; PMCID: PMC10958879.


Márquez-Nogueras K, Bovo E, Neczypor J, Cao Q, Zima A, Kuo I. Utilization of the genetically encoded calcium indicator Salsa6F in cardiac applications. 2024 May 119, 102873; doi:10.1016. Epub 2024 Mar 20.


Vellky JE, Wu Y, Moline D, Drnevich J, Maienschein-Cline M, Valyi-Nagy K, Kajdacsy-Balla A, Vander Griend DJ. Single-cell RNA sequencing of human prostate basal epithelial cells reveals zone-specific cellular populations and gene expression signatures. J Pathol. 2024 Feb;262(2):212-225. doi: 10.1002/path.6227. Epub 2023 Nov 20. PMID: 37984408; PMCID: PMC10842206.




Kremer LE, Chapman AB, Armato SG 3rd. Magnetic resonance imaging preprocessing and radiomic features for classification of autosomal dominant polycystic kidney disease genotype. J Med Imaging (Bellingham). 2023 Nov;10(6):064503. doi: 10.1117/1.JMI.10.6.064503. Epub 2023 Dec 27. PMID: 38156331; PMCID: PMC10752557.


Hochstedler-Kramer BR, Ene A, Putonti C, Wolfe AJ. Comparative genomic analysis of clinical Enterococcus faecalis distinguishes strains isolated from the bladder. BMC Genomics. 2023 Dec 7;24(1):752. doi: 10.1186/s12864-023-09818-z. PMID: 38062354; PMCID: PMC10701997. 


Li Z, Chen L, Sepulveda M, Wang P, Rasic M, Tullius SG, Perkins D, Alegre ML. Microbiota-dependent and -independent effects of obesity on transplant rejection and hyperglycemia. Am J Transplant. 2023 Jun 23:S1600-6135(23)00542-7.


Bishop B, Sharma S, Scott EA. Nanomedicine in kidney disease. Curr Opin Nephrol Hypertens 32(4):p 366-376, July 2023. DOI: 10.1097/MNH.0000000000000897


Ng LC, Harris BJ, Larmore M, Ta MC, Vien TN, Tokars VL, Yarov-Yarovoy V, DeCaen PG. Energetic landscape of polycystin channel gating. EMBO Rep. 2023 Jul 5;24(7):e56783. doi: 10.15252/embr.202356783. Epub 2023 May 9. PMID: 37158562; PMCID: PMC10328073.


Márquez-Nogueras KM, Vuchkovska V, Kuo IY. Calcium signaling in polycystic kidney disease- cell death and survival. Cell Calcium. 2023 Jun;112:102733.


Márquez-Nogueras KM, Kuo IY. Cardiovascular perspectives of the TRP channel polycystin 2. J Physiol. 2023 Jun 13.


Ally, SA, Han, J, Sun, R, Molokie, RE, Gordeuk, VR, Lash, JP, & Saraf, SL. Community-level socioeconomic distress is associated with nutritional status in adults with sickle cell anemia. eJHaem. 2023; 15.


Esarte Palomero O, Larmore M, DeCaen PG. Polycystin Channel Complexes. Annu Rev Physiol. 2023 Feb 10;85:425-448. doi: 10.1146/annurev-physiol-031522-084334. PMID: 36763973.


Li, Z, Rasic, M, Kwan, M, Sepulveda, M, McIntosh, C, Shastry, V., Chen, L, Finn, P, Perkins, D, & Alegre, ML. Oral administration of the commensal Alistipes onderdonkii prolongs allograft survival, American Journal of Transplantation. 2023; ISSN 1600-6135,




Moline, DC, Zenner, ML, Burr, A, Vellky, JE, Nonn, L, & Vander Griend, & DJ. Single-cell RNA-Seq identifies factors necessary for the regenerative phenotype of prostate luminal epithelial progenitors. American journal of clinical and experimental urology. 2022; 10(6), 425–439. PMID: 36636696; PMCID: PMC9831919.


Márquez-Nogueras KM, Vuchkovska V, DiNello E, Osorio-Valencia S, Kuo IY. Polycystin-2 (PC2) is a key determinant of in vitro myogenesis. American journal of physiology. Cell physiology. 2022 Aug 1; 323(2):C333-C346. PMID: 35675637; PMCID: PMC9291421.


Hochstedler-Kramer B, Joyce C, Abdul-Rahim O, Barnes HC, Mueller ER, Wolfe AJ, Brubaker L and Burnett LA (2022) One Size Does Not Fit All: Variability in Urinary Symptoms and Microbial Communities. Front. Urol. 2:890990. doi: 10.3389/fruro.2022.890990 Frontiers | One Size Does Not Fit All: Variability in Urinary Symptoms and Microbial Communities (


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