Northwestern University Cell Imaging Facility

Director    Teng-Leong Chew, Ph.D.

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Instruments:

Laser Scanning Confocal

Photo-activation & Conversion

Spinning Disc Confocal

Fluor. Emission Fingerprinting

Nuance Spectral Unmixing System

Total Internal Reflection Fluor. 

Axioskop Fluo. Microscope

Microinjector

Rotary Shadowing System

Ultramicrotomes

Trans. Electron Microscopes

Software:

MetaMorph 6.0

Volocity 2.0

Zeiss LSM 510 Software

Zeiss Image Examiner

Resources:

Publications

Links

Technical Tips

References and Books

 

 

Web Design: Teng-Leong Chew



Nuance Spectral Unmixing System:

The Nuance spectral unmixing system is a generous gift of Dr. Charles V. Clevenger, Diana Princess of Wales Professor of Cancer Research and Pathology

his Conventional fluorescent microscopes rely on combinations of filters to allow only the desired wavelengths to reach the camera or PMTs. The increasing number of fluorophores and tissue stains used by cell biologists inevitably narrows the gap between emission peaks of various fluorescent molecules. This means that many commonly used fluorophores/stains have overlapping spectra, contributing to crosstalk between channels used in regular fluorescent microscopes. Investigators who routinely examine thick tissue samples using fluorescent microscopy will notice the tremendous background autofluorescence from tissues. These problems pose great challenge to the successful and accurate interpretation of fluorescent imaging data.


The Nuance multispectral imaging system, like the META module on the LSM510 laser scanning microscope (link to META sub), is capable of simultaneously detecting the overlapping spectra of multiple fluorophores or tissue stains in a thick section sample. It can generate a library of component spectra, including spectra of tissue background autofluorescence, then “unmix” or separate each spectrum into an individual channel. In contrast to the LSM 510 META, the Nuance system is ideal for brightfield imaging of tissues treated with clinical stains, such as hematoxylin and eosin, and also for fluorescence imaging of tissues stained with various fluorophores.


The Nuance camera is mounted on a Zeiss Axioskop 50, and is equipped with white light and mercury arc illumination. Filter sets are suitable for the excitation and visualization of DAPI/Hoechst, FITC/ GFP, rhodamine/dsRED, and Cy5 fluorophores.

How it works:

1. A background- corrected RGB image is gathered.

2. A spectral library is automatically collected by the system.

3. The library is used to separate the image spectra data into descrete spectral "channels", automatically using the Real Component Analysis (RCA) module, or manually as designated by the user.

4. The user assigns a color to each channel and its corresponding spectrum. Here. hematoxylin is colored blue, eosin pink, and the background is colored white.

6. The resulting image is displayed after the user clicks the "Unmix" button.